CLUSTAL X Multiple Sequence Alignment Program (version 1.81, June 2000) Julie Thompson and Francois Jeanmougin julie@igbmc.u-strasbg.fr, jeanmougin@logidee.com Clustal X provides a window-based user interface to the ClustalW multiple alignment program. It uses the Vibrant multi-platform user interface development library, developed by the National Center for Biotechnology Information as part of their NCBI SOFTWARE DEVELOPMENT TOOLKIT. The toolkit is available by anonymous ftp from ncbi.nlm.nih.gov This directory contains files: clustalx1.81.PPC.sea.Hqx - a Macintosh PowerMac self-extracting archive clustalx1.81.msw.zip - a MSwin32 ZIP archive clustalx1.81.sun.tar.Z - a compressed SUN tar file clustalx1.81.sgi.tar.Z - a compressed SGI tar file clustalx1.81.alpha.tar.Z - a compressed Digital Unix 4.0 tar file clustalx1.81.linux.tar.gz - a compressed Linux tar file with ELF static binaries clustalx1.5b.alphaNT.zip - a compressed DEC Alpha with WindowsNT file (thanks to Russell L. Malmberg. see also : http://dogwood.botany.uga.edu/malmberg/software.html/) Each archive contains the same files: clustalx - executable for clustal with window interface clustalw - executable for clustal with old 'text' menus README - a list of changes to the latest revision, installation guide, etc. clustalv.doc - clustalV documentation clustalw.doc - clustalW documentation clustalw_help - online help file for clustalw clustalx_help - online help file for clustalx clustalx.html - html'ised verion of clustalx_help colprot.par - color parameter file for clustalx (DNA) coldna.par - color parameter file for clustalx (protein) colprint.par - color parameter file for postscript printing makefile.alpha makefile.sgi makefile.sun alnscore.c amenu.c calcgapcoeff.c calcpam.c calcprf1.c calcprf2.c calctree.c clustalw.c clustalx.c gcgcheck.c interface.c malign.c pairalign.c prfalign.c random.c readmat.c sequence.c showpair.c trees.c util.c xcolor.c xmenu.c xdisplay.c xscore.c xutils.c clustalw.h dayhoff.h general.h matrices.h param.h xmenu.h