src/clustal/ktuple_pair.h File Reference

#include "seq.h"
#include "symmatrix.h"
#include "progress.h"
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Data Structures

struct  ktuple_param_t


void KTuplePairDist (symmatrix_t *tmat, mseq_t *mseq, int istart, int iend, int jstart, int jend, ktuple_param_t *aln_param, progress_t *prProgress, unsigned long int *ulStepNo, unsigned long int ulTotalStepNo)

Function Documentation

void KTuplePairDist ( symmatrix_t tmat,
mseq_t mseq,
int  istart,
int  iend,
int  jstart,
int  jend,
ktuple_param_t param_override,
progress_t prProgress,
unsigned long int *  ulStepNo,
unsigned long int  ulTotalStepNo 

Will compute ktuple scores and store in tmat Following values will be set: tmat[i][j], where istart <= i <iend and jstart <= j < jend i.e. zero-offset tmat data members have to be preallocated

if ktuple_param_t *aln_param == NULL defaults will be used

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